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Designing scientific SPARQL queries using autocompletion by snippets

Karima Rafes , Serge Abiteboul , Sarah Cohen-Boulakia , Bastien Rance
14th IEEE International Conference on eScience, Oct 2018, Amsterdam, Netherlands
Conference papers hal-01874780v2
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Nicolas Levy , Aurélien Naldi , Céline Hernandez , Gautier Stoll , Denis Thieffry , et al.
Frontiers in Physiology, 2018, 9, pp.787. ⟨10.1101/319780⟩
Journal articles hal-01809081v1
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Reduction of Qualitative Models of Biological Networks for Transient Dynamics Analysis

Loïc Paulevé
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 15 (4), pp.1167-1179. ⟨10.1109/TCBB.2017.2749225⟩
Journal articles hal-01580765v1
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Fast Inference of Individual Admixture Coefficients Using Geographic Data

Kevin Caye , Flora Jay , Olivier J.J. Michel , Olivier François
Annals of Applied Statistics, 2018, 12 (1), pp.586-608. ⟨10.1214/17-AOAS1106⟩
Journal articles hal-01676712v1
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Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families

Vladimir Reinharz , Antoine Soulé , Eric Westhof , Jérôme Waldispühl , Alain Denise
Nucleic Acids Research, 2018
Journal articles hal-01745345v1
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Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data

Misbah Razzaq , Loïc Paulevé , Anne Siegel , Julio Saez-Rodriguez , Jérémie Bourdon , et al.
PLoS Computational Biology, 2018, 14, pp.1-23. ⟨10.1371/journal.pcbi.1006538⟩
Journal articles hal-01897020v1
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Aurélien Naldi , Céline Hernandez , Nicolas Levy , Gautier Stoll , Pedro Monteiro , et al.
Frontiers in Physiology, 2018, 9, pp.n°680:1-13. ⟨10.3389/fphys.2018.00680⟩
Journal articles hal-01794294v2
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Mining conserved neighborhood patterns in metabolic and genomic contexts

Alexandra Zaharia
Bioinformatics [q-bio.QM]. Université Paris Saclay, 2018. English. ⟨NNT : 2018SACLS275⟩
Theses tel-01933663v1
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Dimension reduction adapted to paleogenomics

Séverine Liégeois , Olivier François , Flora Jay
Paris-Saclay Junior Conference on Data Science and Engineering, Sep 2018, Orsay, France
Conference poster hal-01978650v1
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Meet-U: educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon , et al.
PLoS Computational Biology, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-01722019v1
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Gearing up to handle the mosaic nature of life in the quest for orthologs

Kristoffer Forslund , Cécile Pereira , Salvador Capella-Gutiérrez , Alan Sousa da Silva , Adrian M Altenhoff , et al.
Bioinformatics, 2018, 34 (2), pp.323-329. ⟨10.1093/bioinformatics/btx542⟩
Journal articles hal-01758841v1
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Computer‐aided biochemical programming of synthetic microreactors as diagnostic devices

Alexis Courbet , Patrick Amar , François Fages , Eric Renard , Franck Molina
Molecular Systems Biology, 2018, 14 (4), ⟨10.15252/msb.20177845⟩
Journal articles hal-01779791v1
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A logic-based method to build signaling networks and propose experimental plans

Adrien Rougny , Pauline Gloaguen , Nathalie Langonné , Eric Reiter , Pascale Crépieux , et al.
Scientific Reports, 2018, 8 (1), pp.1-11. ⟨10.1038/s41598-018-26006-2⟩
Journal articles hal-01802480v1
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Fixed-Parameter Tractable Sampling for RNA Design with Multiple Target Structures

Stefan Hammer , Yann Ponty , Wei Wang , Sebastian Will
RECOMB 2018 – 22nd Annual International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France
Conference papers hal-01631277v1
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Boolean Networks: Beyond Generalized Asynchronicity

Thomas Chatain , Stefan Haar , Loïc Paulevé
AUTOMATA 2018 - 24th IFIP WG 1.5 International Workshop on Cellular Automata and Discrete Complex Systems, Jun 2018, Ghent, Belgium. pp.29-42, ⟨10.1007/978-3-319-92675-9_3⟩
Conference papers hal-01768359v2
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Analyse statique des réseaux booléens

Loïc Paulevé , Adrien Richard
Emmanuel Jeandel; Laurent Vigneron. Informatique Mathématique, Une photographie en 2018, CNRS Éditions, pp.157-194, 2018, 78-2-271-11974-2
Book sections hal-01753101v1