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Identification of Biological Regulatory Networks from Process Hitting models

Maxime Folschette , Loïc Paulevé , Katsumi Inoue , Morgan Magnin , Olivier Roux
Theoretical Computer Science, 2015, 568, pp.39. ⟨10.1016/j.tcs.2014.12.002⟩
Journal articles hal-01094249v1
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Cell cycle progression is regulated by intertwined redox oscillators

Jorgelindo da Veiga Moreira , Sabine Pérès , Jean-Marc Steyaert , Erwan Bigan , Loïc Paulevé , et al.
Theoretical Biology and Medical Modelling, 2015, 12 (1), pp.10. ⟨10.1186/s12976-015-0005-2⟩
Journal articles hal-01158514v1
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Unraveling the molecular architecture of a G protein-coupled receptor/β-arrestin/Erk module complex

Thomas Bourquard , Flavie Landomiel , Eric Reiter , Pascale Crépieux , David W. Ritchie , et al.
Scientific Reports, 2015, 5, pp.5:10760. ⟨10.1038/srep10760⟩
Journal articles lirmm-01162594v1
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Data Integration in the Life Sciences: Scientific Workflows, Provenance, and Ranking

Sarah Cohen-Boulakia
Bioinformatics [q-bio.QM]. Université Paris-Sud, 2015
Habilitation à diriger des recherches tel-01245229v1
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Agrégation de classements avec égalités : algorithmes, guides à l'utilisateur et applications aux données biologiques

Bryan Brancotte
Bio-informatique [q-bio.QM]. Université Paris Sud - Paris XI, 2015. Français. ⟨NNT : 2015PA112184⟩
Theses tel-01252694v1
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Two Qualitative Dynamics Semantics for SBGN Process Description Maps

Adrien Rougny , Christine Froidevaux , Loïc Paulevé
CMSB'15, Sep 2015, Nantes, France. 2015
Conference poster hal-01258943v1
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Classification of RNA Pseudoknots and Comparison of Structure Prediction Methods

Cong Zeng
Bioinformatics [q-bio.QM]. Université Paris Sud - Paris XI, 2015. English. ⟨NNT : 2015PA112127⟩
Theses tel-01297053v1
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Rank aggregation with ties: Experiments and Analysis

Bryan Brancotte , Bo Yang , Guillaume Blin , Sarah Cohen-Boulakia , Alain Denise , et al.
Proceedings of the VLDB Endowment (PVLDB), 2015, Proceedings of the VLDB Endowment (PVLDB), 8 (11), pp.1202-1213. ⟨10.14778/2809974.2809982⟩
Journal articles hal-01165336v1
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Boolean Network Identification from Multiplex Time Series Data

Max Ostrowski , Loïc Paulevé , Torsten Schaub , Anne Siegel , Carito Guziolowski
CMSB 2015 - 13th conference on Computational Methods for Systems Biology, Sep 2015, Nantes, France. pp.170-181, ⟨10.1007/978-3-319-23401-4_15⟩
Conference papers hal-01164751v1
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Proceedings of the SeqBio 2015 workshop: String algorithms for bioinformatics

Alain Denise , Olivier Lespinet , Mireille Régnier
Alain Denise; Olivier Lespinet; Mireille Régnier. 2015
Books hal-01264187v1
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Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data

Christian Fournier , Simon Artzet , Jérôme Chopard , Michael Mielewczik , Nicolas Brichet , et al.
IAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences), Sep 2015, Louvain-la-Neuve, Belgium.
Conference poster hal-01253627v1
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Analyses statiques de la dynamique des réseaux d'automates indéterministes

Loïc Paulevé , Maxime Folschette , Morgan Magnin , Olivier Roux
Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2015, 34 (4), pp.22. ⟨10.3166/TSI.34.463-484⟩
Journal articles hal-01070295v2
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Sufficient Conditions for Reachability in Automata Networks with Priorities

Maxime Folschette , Loïc Paulevé , Morgan Magnin , Olivier F. Roux
Theoretical Computer Science, 2015, ⟨10.1016/j.tcs.2015.08.040⟩
Journal articles hal-01202671v1
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OpenAlea: Scientific Workflows Combining Data Analysis and Simulation

Christophe Pradal , Christian Fournier , Patrick Valduriez , Sarah Cohen-Boulakia
SSDBM: Scientific and Statistical Database Management, Jun 2015, San Diego, United States. ⟨10.1145/2791347.2791365⟩
Conference papers hal-01166298v1