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Layer Decomposition: An Effective Structure-based Approach for Scientific Workflow Similarity

Johannes Starlinger , Sarah Cohen-Boulakia , Sanjeev Khanna , Susan Davidson , Ulf Leser
International Conference on e-Science, Oct 2014, Guarujá, Brazil. pp.169-176, ⟨10.1109/eScience.2014.19⟩
Conference papers hal-01066076v1
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Similarity Search for Scientific Workflows

Johannes Starlinger , Bryan Brancotte , Sarah Cohen-Boulakia , Ulf Leser
Proceedings of the VLDB Endowment (PVLDB), 2014, 7 (12), pp.1143-1154. ⟨10.14778/2732977.2732988⟩
Journal articles hal-01066046v1
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Apprentissage de fonctions de tri pour la prédiction d'interactions protéine-ARN

Adrien Guilhot-Gaudeffroy , Jérôme Azé , Julie Bernauer , Christine Froidevaux
EGC: Extraction et Gestion des Connaissances, Jan 2014, Rennes, France. pp.479-484
Conference papers hal-01016683v1
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Modélisation et score de complexes protéine-ARN

Adrien Guilhot-Gaudeffroy
Autre [cs.OH]. Université Paris Sud - Paris XI, 2014. Français. ⟨NNT : 2014PA112228⟩
Theses tel-01081605v1
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A meta-approach for improving the prediction and the functional annotation of ortholog groups

Cécile Pereira , Alain Denise , Olivier Lespinet
Journal articles inserm-01229454v1
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Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities.

Adrien Guilhot-Gaudeffroy , Christine Froidevaux , Jérôme Azé , Julie Bernauer
PLoS ONE, 2014, 9 (9), pp.e108928. ⟨10.1371/journal.pone.0108928⟩
Journal articles hal-01071876v1
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DistillFlow: removing redundancy in scientific workflows

Jiuqiang Chen , Sarah Cohen-Boulakia , Christine Froidevaux , Carole Goble , Paolo Missier , et al.
SSDBM '14 Proceedings of the 26th International Conference on Scientific and Statistical Database Management, Jun 2014, Aalborg, Denmark. ⟨10.1145/2618243.2618287⟩
Conference papers hal-01091033v1
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ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data

Bryan Brancotte , Bastien Rance , Alain Denise , Sarah Cohen-Boulakia
10th International Conference, Data Integration in the Life Sciences, Jul 2014, Lisbon, Portugal. pp.128 - 142, ⟨10.1007/978-3-319-08590-6_13⟩
Conference papers hal-01091053v1
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Bioinformatics analysis and consensus ranking for biological high throughput data

Bo Yang
Bioinformatics [q-bio.QM]. Université Paris Sud - Paris XI; Université de Wuhan (Chine), 2014. English. ⟨NNT : 2014PA112250⟩
Theses tel-01207489v1
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Characterization of Reachable Attractors Using Petri Net Unfoldings

Thomas Chatain , Stefan Haar , Loïg Jezequel , Loïc Paulevé , Stefan Schwoon
CMSB 2014, Nov 2014, Manchester, United Kingdom. pp.14, ⟨10.1007/978-3-319-12982-2_10⟩
Conference papers hal-01060450v1
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Analyzing Large Network Dynamics with Process Hitting

Loïc Paulevé , Courtney Chancellor , Maxime Folschette , Morgan Magnin , Olivier Roux
Luis Fariñas del Cerro; Katsumi Inoue. Logical Modeling of Biological Systems, Wiley, pp.125 - 166, 2014, 978-1-84821-680-8
Book sections hal-01060490v1
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Distilling structure in Taverna scientific workflows: a refactoring approach

Sarah Cohen-Boulakia , Jiuqiang Chen , Paolo Missier , Carole Goble , Alan Williams , et al.
BMC Bioinformatics, 2014, 15 (Suppl 1), pp.S12
Journal articles hal-00926827v1
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Breast cancer and quality of life: medical information extraction from health forums

Thomas Opitz , Jérôme Azé , Sandra Bringay , Cyrille Joutard , Christian Lavergne , et al.
25th European Medical Informatics Conference (MIE), Aug 2014, Istanbul, Turkey. pp.1070-1074, ⟨10.3233/978-1-61499-432-9-1070⟩
Conference papers hal-01061891v1