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Validation de biomarqueurs prédictifs de la réponse au traitement : extension des courbes de prédictivités à un critère de jugement censuré

Bassirou Mboup
Statistiques [math.ST]. Université Paris-Saclay, 2020. Français. ⟨NNT : 2020UPASR011⟩
Theses tel-03176621v1

Stability-based comparison of class discovery methods for DNA copy number profiles.

Isabel Brito , Philippe Hupé , Pierre Neuvial , Emmanuel Barillot
PLoS ONE, 2012, 8 (12), pp.e81458
Journal articles hal-01201580v1
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Graph-Based Spatial Segmentation of Health-Related Areal Data

Vivien Goepp , Jan van de Kassteele
Computational Statistics and Data Analysis, 2022, ⟨10.48550/arXiv.2206.06752⟩
Journal articles hal-03474990v1
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Tight convex relaxations for sparse matrix factorization

Emile Richard , Guillaume Obozinski , Jean-Philippe Vert
Preprints, Working Papers, ... hal-01025959v3
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Vector quantization and clustering in presence of censoring

Svetlana Gribkova
Preprints, Working Papers, ... hal-01075676v1

Classification of gene signatures for their information value and functional redundancy

Laura Cantini , Laurence Calzone , Loredana Martignetti , Mattias Rydenfelt , Nils Blüthgen , et al.
npj Systems Biology and Applications, 2018, 4 (1), ⟨10.1038/s41540-017-0038-8⟩
Journal articles hal-02129604v1

Comparing phylogenetic and statistical classification methods for DNA barcoding

Frédéric Austerlitz , Olivier David , Brigitte Schaeffer , Kevin Bleakley , Madalina Olteanu , et al.
In Second International Barcode of Life Conference. Consortium for the Barcode of Life, Sep 2007, Taipei, Taiwan
Conference papers hal-02757822v1
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Model learning to identify systemic regulators of the peripheral circadian clock

Julien Martinelli , Sandrine Dulong , Xiao-Mei Li , Michèle Teboul , Sylvain Soliman , et al.
Bioinformatics, 2021, 37 (Supplement_1), pp.9. ⟨10.1093/bioinformatics/btab297⟩
Journal articles hal-03183579v1

Robust Seriation and Applications to Cancer Genomics

Antoine Recanati , Nicolas Servant , Jean-Philippe Vert , Alexandre d'Aspremont
Preprints, Working Papers, ... hal-01851960v1
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Supervised Reconstruction of Biological Networks with Local Models

Kevin Bleakley , Gérard Biau , Jean-Philippe Vert
Preprints, Working Papers, ... hal-00130277v1

On learning matrices with orthogonal columns or disjoint supports

Kevin Vervier , Pierre Mahé , Alexandre d'Aspremont , Jean-Baptiste Veyrieras , Jean-Philippe Vert
European Conference, ECML PKDD 2014, Sep 2014, Nancy, France. pp.274-289, ⟨10.1007/978-3-662-44845-8_18⟩
Conference papers hal-01101875v1
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Global alignment of protein-protein interaction networks by graph matching methods.

Mikhail Zaslavskiy , Francis Bach , Jean-Philippe Vert
Bioinformatics, 2009, 25 (12), pp.i259-67. ⟨10.1093/bioinformatics/btp196⟩
Journal articles hal-00382501v1

A bagging SVM to learn from positive and unlabeled examples

Fantine Mordelet , Jean-Philippe Vert
Pattern Recognition Letters, 2014, 37, pp.201-209. ⟨10.1016/j.patrec.2013.06.010⟩
Journal articles hal-01101852v1
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Clusterpath An Algorithm for Clustering using Convex Fusion Penalties

Toby Dylan Hocking , Armand Joulin , Francis Bach , Jean-Philippe Vert
28th international conference on machine learning, Jun 2011, United States. pp.1
Conference papers hal-00591630v1
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Novel Methods for Epistasis Detection in Genome-Wide Association Studies

Lotfi Slim , Clement Chatelain , Jean-Philippe Vert , Chloé-Agathe Azencott
PLoS ONE, 2020, 15 (11), pp.e0242927. ⟨10.1371/journal.pone.0242927⟩
Journal articles hal-01984919v2
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Progress and open challenges in extremely high-dimensional medical outcome prediction

Kevin Bleakley
Journées MAS et Journée en l'honneur de Jacques Neveu, Aug 2010, Talence, France
Documents associated with scientific events inria-00509772v1

DNA Barcode analysis in nascent species : comparing phylogenetic and statistical classification methods

Michel Veuille , Frédéric Austerlitz , Olivier David , Brigitte Schaeffer , Kevin Bleakley , et al.
DNA Barcoding in Europe European Distributed Institute of Taxonomy, Oct 2007, Leiden, Netherlands. 1 p
Conference papers hal-02822639v1
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Diagnosis with Confidence: Deep Learning for Reliable Classification of Squamous Lesions of the Upper Aerodigestive Tract

Mélanie Lubrano , Yaëlle Bellahsen-Harrar , Sylvain Berlemont , Thomas Walter , Cécile Badoual
Preprints, Working Papers, ... hal-03942781v1

High-resolution mapping of DNA breakpoints to define true recurrences among ipsilateral breast cancers

M. Bollet , N. Servant , Pierre Neuvial , C. Decraene , I. Lebigot , et al.
JNCI: Journal of the National Cancer Institute, 2008, 100 (1), pp.48-58. ⟨10.1093/jnci/djm266⟩
Journal articles hal-00204833v1
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SegAnnot: an R package for fast segmentation of annotated piecewise constant signals

Toby Dylan Hocking , Guillem Rigaill
Preprints, Working Papers, ... hal-00759129v1
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Many-to-Many Graph Matching: a Continuous Relaxation Approach

Mikhail Zaslavskiy , Francis Bach , Jean-Philippe Vert
Preprints, Working Papers, ... hal-00465916v1
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New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels

Benjamin Sadacca , Anne-Sophie Hamy-Petit , Cecile Laurent , Pierre Gestraud , Hélène Bonsang-Kitzis , et al.
Scientific Reports, 2017, 7 (1), pp.15126. ⟨10.1038/s41598-017-14770-6⟩
Journal articles hal-01634180v1

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

Laura Cantini , Gloria Bertoli , Claudia Cava , Thierry Dubois , Andrei Zinovyev , et al.
Nucleic Acids Research, 2019, 47 (5), pp.2205-2215. ⟨10.1093/nar/gkz016⟩
Journal articles hal-02129600v1
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A path following algorithm for the graph matching problem

Mikhail Zaslavskiy , Francis Bach , Jean-Philippe Vert
Preprints, Working Papers, ... hal-00232851v1
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Infering an ontology of single cell motions from high-throughput microscopy data

Alice Schoenauer Sebag , Sandra Plancade , Céline Raulet-Tomkiewicz , Robert Barouki , Jean-Philippe Vert , et al.
IEEE 12th International Symposium on Biomedical Imaging, Apr 2015, New York, United States. pp.4, ⟨10.1109/ISBI.2015.7163840⟩
Conference papers hal-02742630v1

Considerations sur l'analyse des données dans le cadre du Barcode de l'ADN

Frédéric Austerlitz , Olivier David , Brigitte Schaeffer , K. Bleakley , M. Olteanu , et al.
GDR Génomique des populations et génomique evolutive, Sep 2009, Paris, France
Conference papers hal-02817959v1

Asymptotic Properties of False Discovery Rate Controlling Procedures Under Independence

Pierre Neuvial
Electronic Journal of Statistics , 2008, 2, pp.1065-1110. ⟨10.1214/08-EJS20⟩
Journal articles hal-00286066v1

Tight convex relaxations for sparse matrix factorization

Emile Richard , Guillaume Obozinski , Jean-Philippe Vert
Neural Information Processing Systems, Dec 2014, Montreal, Canada. pp.3284-3292
Conference papers hal-01101878v1
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L'alignement de graphes : applications en bioinformatique et vision par ordinateur

Mikhail Zaslavskiy
Mathématiques [math]. École Nationale Supérieure des Mines de Paris, 2010. Français. ⟨NNT : ⟩
Theses pastel-00006121v1
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Consistency of random forests

Erwan Scornet , Gérard Biau , Jean-Philippe Vert
Annals of Statistics, 2015, 43 (4), pp.1716-1741. ⟨10.1214/15-AOS1321⟩
Journal articles hal-00990008v4